query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_009589 LXL04_009589 function LXL04_009589 Similar to At3g47830: Putative DNA glycosylase At3g47830 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0006281 DNA repair biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0006284 base-excision repair biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.459; coverage=40.532; evalue=1.65e-106; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0006285 base-excision repair, AP site formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:TreeGrafter UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0040029 epigenetic regulation of gene expression biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0050832 defense response to fungus biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0141166 chromosomal 5-methylcytosine DNA demethylation pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0141169 chromosomal 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.636; coverage=27.074; evalue=1.66e-13; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14; UniProt GO evidence=IEA:UniProtKB-SubCell UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0005730 nucleolus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14; UniProt GO evidence=IEA:UniProtKB-SubCell UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0005739 mitochondrion cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.459; coverage=40.532; evalue=1.65e-106; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.459; coverage=40.532; evalue=1.65e-106; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0016829 lyase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.636; coverage=27.074; evalue=1.66e-13; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0019104 DNA N-glycosylase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:TreeGrafter UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0035514 DNA demethylase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0046872 metal ion binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0051539 4 iron, 4 sulfur cluster binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0051747 cytosine C-5 DNA demethylase activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16; UniProt GO evidence=IEA:UniProtKB-EC UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 GO GO:0140097 catalytic activity, acting on DNA molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.459; coverage=40.532; evalue=1.65e-106; UniProt GO evidence=IEA:UniProtKB-ARBA UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG ath:AT2G36490 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.058; coverage=27.074; evalue=7.52e-14 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG ath:AT3G47830 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.459; coverage=40.532; evalue=1.65e-106 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG dosa:Os01g0217900 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG dosa:Os05g0445900 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.636; coverage=27.074; evalue=1.66e-13 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG osa:9271145 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.054; coverage=40.845; evalue=3.15e-14 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 KEGG sai:Saci_1497 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.928; coverage=30.36; evalue=6.64e-16 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_009589 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_009589 LXL04_009589 organism_homology F4JCQ3 Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 PE=3 SV=1 Arabidopsis thaliana identity=59.459; coverage=40.063; evalue=1.65e-106; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_009589; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_009589 False LXL04_009589 LXL04_009589 organism_homology C7IW64 Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2 Oryza sativa subsp. japonica identity=26.054; coverage=38.185; evalue=3.15e-14; rank=3 OH-1004 Swiss-Prot homology; source_gene=LXL04_009589; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_009589 False LXL04_009589 LXL04_009589 reference_gene_function At3g47830 Putative DNA glycosylase At3g47830. Arabidopsis No verified direct reference in this release LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.; PMID=12526807; DOI=10.1016/s0092-8674(02)01133-9 https://pubmed.ncbi.nlm.nih.gov/12526807/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.; PMID=16624880; DOI=10.1073/pnas.0601109103 https://pubmed.ncbi.nlm.nih.gov/16624880/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.; PMID=19443451; DOI=10.1093/nar/gkp390 https://pubmed.ncbi.nlm.nih.gov/19443451/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates.; PMID=20489198; DOI=10.1074/jbc.m110.124578 https://pubmed.ncbi.nlm.nih.gov/20489198/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana.; PMID=24155752; DOI=10.3389/fpls.2013.00420 https://pubmed.ncbi.nlm.nih.gov/24155752/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis.; PMID=25228464; DOI=10.1093/nar/gku834 https://pubmed.ncbi.nlm.nih.gov/25228464/ LXL04_009589 LXL04_009589 reference_gene_literature At2g36490 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Arabidopsis The carboxy-terminal domain of ROS1 is essential for 5-methylcytosine DNA glycosylase activity.; PMID=25240767; DOI=10.1016/j.jmb.2014.09.010 https://pubmed.ncbi.nlm.nih.gov/25240767/ LXL04_009589 LXL04_009589 reference_gene_literature Os01g0218032 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity (Probable). Rice A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny.; PMID=22448681; DOI=10.1111/j.1365-313x.2012.05009.x https://pubmed.ncbi.nlm.nih.gov/22448681/ LXL04_009589 LXL04_009589 reference_gene_literature Os01g0218032 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity (Probable). Rice Mutations in the DNA demethylase OsROS1 result in a thickened aleurone and improved nutritional value in rice grains.; PMID=30275307; DOI=10.1073/pnas.1806304115 https://pubmed.ncbi.nlm.nih.gov/30275307/ LXL04_009589 LXL04_009589 reference_gene_literature Os05g0445900 Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity. Rice A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.; PMID=21896764; DOI=10.1073/pnas.1112704108 https://pubmed.ncbi.nlm.nih.gov/21896764/