query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_001236 LXL04_001236 function LXL04_001236 Similar to PIF3: Transcription factor PIF3 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0007165 signal transduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TIGR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009408 response to heat biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009409 response to cold biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009585 red, far-red light phototransduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009639 response to red or far red light biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009641 shade avoidance biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36; UniProt GO evidence=IEP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009704 de-etiolation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009723 response to ethylene biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009733 response to auxin biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009737 response to abscisic acid biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009740 gibberellic acid mediated signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009742 brassinosteroid mediated signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009826 unidimensional cell growth biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0010017 red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0031539 positive regulation of anthocyanin metabolic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0042548 regulation of photosynthesis, light reaction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0045893 positive regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0080006 internode patterning biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0080113 regulation of seed growth biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0090229 negative regulation of red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1902074 response to salt biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1905421 regulation of plant organ morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1990785 response to water-immersion restraint stress biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0000976 transcription cis-regulatory region binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0003700 DNA-binding transcription factor activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0042802 identical protein binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:IntAct UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0043565 sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0046983 protein dimerization activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG ath:AT1G09530 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG ath:AT2G46970 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os01g0286100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os03g0782500 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os05g0139100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG osa:4327916 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 organism_homology O80536 Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1 Arabidopsis thaliana identity=39.871; coverage=64.129; evalue=7.71e-67; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_001236; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001236 False LXL04_001236 LXL04_001236 organism_homology Q0JNI9 Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL15 PE=1 SV=2 Oryza sativa subsp. japonica identity=34.455; coverage=63.69; evalue=6.3e-52; rank=2 OH-1004 Swiss-Prot homology; source_gene=LXL04_001236; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001236 False LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 Transcription factor acting in the phytochrome signaling pathway. Arabidopsis PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.; PMID=23548744; DOI=10.1105/tpc.113.109710 https://pubmed.ncbi.nlm.nih.gov/23548744/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 Transcription factor acting in the phytochrome signaling pathway. Arabidopsis Coordinated Regulation of Hypocotyl Cell Elongation by Light and Ethylene through a Microtubule Destabilizing Protein.; PMID=29167353; DOI=10.1104/pp.17.01109 https://pubmed.ncbi.nlm.nih.gov/29167353/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 Transcription factor acting in the phytochrome signaling pathway. Arabidopsis Submergence stress-induced hypocotyl elongation through ethylene signaling-mediated regulation of cortical microtubules in Arabidopsis.; PMID=31638649; DOI=10.1093/jxb/erz453 https://pubmed.ncbi.nlm.nih.gov/31638649/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 Transcription factor acting in the phytochrome signaling pathway. Arabidopsis PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.; PMID=31732705; DOI=10.1105/tpc.19.00515 https://pubmed.ncbi.nlm.nih.gov/31732705/ LXL04_001236 LXL04_001236 reference_gene_literature At2g46970 Transcription factor. Arabidopsis Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis.; PMID=16565297; DOI=10.1104/pp.105.076331 https://pubmed.ncbi.nlm.nih.gov/16565297/ LXL04_001236 LXL04_001236 reference_gene_literature Os01g0286100 Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Rice Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.; PMID=17485859; DOI=10.1271/bbb.60643 https://pubmed.ncbi.nlm.nih.gov/17485859/ LXL04_001236 LXL04_001236 reference_gene_function Os05g0139100 Atypical bHLH transcription factor that acts as a negative regulator of grain size. Rice No verified direct reference in this release LXL04_001236 LXL04_001236 reference_gene_literature Os03g0782500 Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Rice Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.; PMID=17485859; DOI=10.1271/bbb.60643 https://pubmed.ncbi.nlm.nih.gov/17485859/ LXL04_001236 LXL04_001236 reference_gene_literature Os03g0782500 Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. Rice Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.; PMID=22984180; DOI=10.1073/pnas.1207324109 https://pubmed.ncbi.nlm.nih.gov/22984180/