Species	Reference gene ID	Possible function	Papers / DOI
Arabidopsis	At2g16390	Subunit of the chromatin-remodeling complex (DDR complex) that mediates RNA polymerases IV and V (Pol IV and Pol V) recruitment to chromatin.	Atypical RNA polymerase subunits required for RNA-directed DNA methylation.; 2005; DOI: 10.1038/ng1580; PMID: 15924141; https://pubmed.ncbi.nlm.nih.gov/15924141/ | A SNF2-like protein facilitates dynamic control of DNA methylation.; 2005; DOI: 10.1038/sj.embor.7400446; PMID: 15947783; https://pubmed.ncbi.nlm.nih.gov/15947783/ | Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.; 2006; DOI: 10.1038/sj.emboj.7601150; PMID: 16724114; https://pubmed.ncbi.nlm.nih.gov/16724114/ | RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis.; 2006; DOI: 10.1371/journal.pgen.0020083; PMID: 16741558; https://pubmed.ncbi.nlm.nih.gov/16741558/ | A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.; 2008; DOI: 10.1038/ng.119; PMID: 18425128; https://pubmed.ncbi.nlm.nih.gov/18425128/ | Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes.; 2008; DOI: 10.1016/j.cell.2008.09.035; PMID: 19013275; https://pubmed.ncbi.nlm.nih.gov/19013275/ | NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.; 2009; DOI: 10.1101/gad.1765209; PMID: 19204117; https://pubmed.ncbi.nlm.nih.gov/19204117/ | Defining the functional network of epigenetic regulators in Arabidopsis thaliana.; 2009; DOI: 10.1093/mp/ssp017; PMID: 19825647; https://pubmed.ncbi.nlm.nih.gov/19825647/ | RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway.; 2009; DOI: 10.1093/mp/ssp006; PMID: 19825650; https://pubmed.ncbi.nlm.nih.gov/19825650/ | The RNA silencing enzyme RNA polymerase v is required for plant immunity.; 2011; DOI: 10.1371/journal.pgen.1002434; PMID: 22242006; https://pubmed.ncbi.nlm.nih.gov/22242006/ | RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.; 2012; DOI: 10.4161/epi.20290; PMID: 22647529; https://pubmed.ncbi.nlm.nih.gov/22647529/ | The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin.; 2013; DOI: 10.1016/j.cell.2013.02.033; PMID: 23540698; https://pubmed.ncbi.nlm.nih.gov/23540698/
Arabidopsis	At1g05490	Probable chromatin remodeling factor.	No verified direct reference in this release
Arabidopsis	At3g24340	Probable chromatin remodeling factor.	No verified direct reference in this release
Arabidopsis	At3g42670	Probable chromatin remodeling factor.	Identification of genes required for de novo DNA methylation in Arabidopsis.; 2011; DOI: 10.4161/epi.6.3.14242; PMID: 21150311; https://pubmed.ncbi.nlm.nih.gov/21150311/
Arabidopsis	At5g20420	Probable chromatin remodeling factor.	No verified direct reference in this release